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Class: StudyEntity

Any entity carrying data or context relevant to a Personal Exposure and Health research project or study

  • NOTE: this is an abstract class and should not be instantiated directly

URI: pehterms:StudyEntity

classDiagram class StudyEntity click StudyEntity href "../StudyEntity" NamedThing <|-- StudyEntity click NamedThing href "../NamedThing" StudyEntity <|-- Project click Project href "../Project" StudyEntity <|-- Study click Study href "../Study" StudyEntity <|-- ObservationGroup click ObservationGroup href "../ObservationGroup" StudyEntity <|-- StudyPopulation click StudyPopulation href "../StudyPopulation" StudyEntity <|-- SampleCollection click SampleCollection href "../SampleCollection" StudyEntity <|-- StudySubject click StudySubject href "../StudySubject" StudyEntity <|-- StudySubjectGroup click StudySubjectGroup href "../StudySubjectGroup" StudyEntity : description StudyEntity : id StudyEntity : name StudyEntity : physical_entity StudyEntity --> "0..1" PhysicalEntity : physical_entity click PhysicalEntity href "../PhysicalEntity" StudyEntity : remark StudyEntity : short_name StudyEntity : study_entity_links StudyEntity --> "*" StudyEntityLink : study_entity_links click StudyEntityLink href "../StudyEntityLink" StudyEntity : ui_label StudyEntity : unique_name

Inheritance

Slots

Name Cardinality and Range Description Inheritance
physical_entity 0..1
PhysicalEntity		 direct
study_entity_links *
StudyEntityLink		 direct
id 1
String		 Machine readable, unique identifier; ideally a URI/GUPRI (Globally Unique, Pe... NamedThing
unique_name 0..1
String		 Human readable name, unique across the context the entity is defined in NamedThing
short_name 0..1
String		 Shortened name or code, preferrable unique across the context the entity is d... NamedThing
name 0..1
String		 Common human readable name NamedThing
ui_label 0..1
String		 Human readable label, to be used in user facing interfaces in the most common... NamedThing
description 0..1
String		 Long form description or definition for the entity NamedThing
remark 0..1
String		 Additional comment, note or remark providing context on the use of an entity ... NamedThing

Usages

used by used in type used
EntityList study_entities range StudyEntity
StudyEntityLink study_entity range StudyEntity
Study study_entity_id_list range StudyEntity
StudyPopulation member_id_list range StudyEntity
ObservableEntityPropertySet observable_entity_id_list range StudyEntity
ObservedValue observable_entity range StudyEntity
DataLayoutSection observable_entity_grouping_id_list range StudyEntity
ObservedEntityProperty observable_entity range StudyEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/peh/peh-model

Mappings

Mapping Type Mapped Value
self pehterms:StudyEntity
native pehterms:StudyEntity

LinkML Source

Direct

name: StudyEntity
description: Any entity carrying data or context relevant to a Personal Exposure and
  Health research project or study
from_schema: https://w3id.org/peh/peh-model
is_a: NamedThing
abstract: true
slots:
- physical_entity
- study_entity_links

Induced

name: StudyEntity
description: Any entity carrying data or context relevant to a Personal Exposure and
  Health research project or study
from_schema: https://w3id.org/peh/peh-model
is_a: NamedThing
abstract: true
attributes:
  physical_entity:
    name: physical_entity
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: physical_entity
    owner: StudyEntity
    domain_of:
    - PhysicalEntityLink
    - StudyEntity
    range: PhysicalEntity
    inlined: false
  study_entity_links:
    name: study_entity_links
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: study_entity_links
    owner: StudyEntity
    domain_of:
    - StudyEntity
    range: StudyEntityLink
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Machine readable, unique identifier; ideally a URI/GUPRI (Globally
      Unique, Persistent, Resolvable Identifier).
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: StudyEntity
    domain_of:
    - NamedThing
    range: string
    required: true
  unique_name:
    name: unique_name
    description: Human readable name, unique across the context the entity is defined
      in.
    from_schema: https://w3id.org/peh/peh-model
    close_mappings:
    - schema:identifier
    rank: 1000
    slot_uri: skos:prefLabel
    alias: unique_name
    owner: StudyEntity
    domain_of:
    - NamedThing
    range: string
  short_name:
    name: short_name
    description: Shortened name or code, preferrable unique across the context the
      entity is defined in.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: short_name
    owner: StudyEntity
    domain_of:
    - NamedThing
    range: string
  name:
    name: name
    description: Common human readable name
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:altLabel
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: StudyEntity
    domain_of:
    - NamedThing
    - Contact
    range: string
  ui_label:
    name: ui_label
    description: Human readable label, to be used in user facing interfaces in the
      most common use cases.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: ui_label
    owner: StudyEntity
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Long form description or definition for the entity.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:definition
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: StudyEntity
    domain_of:
    - NamedThing
    range: string
  remark:
    name: remark
    description: Additional comment, note or remark providing context on the use of
      an entity or the interpretation of its properties.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:note
    rank: 1000
    slot_uri: schema:comment
    alias: remark
    owner: StudyEntity
    domain_of:
    - NamedThing
    range: string