Class: SampleCollection

A collection of samples that is itself also a study entity that observations can be recorded for

classDiagram class SampleCollection click SampleCollection href "../SampleCollection" StudyEntity <|-- SampleCollection click StudyEntity href "../StudyEntity" SampleCollection : constraints SampleCollection : description SampleCollection : id SampleCollection : matrix SampleCollection --> "0..1" Matrix : matrix click Matrix href "../Matrix" SampleCollection : name SampleCollection : physical_entity SampleCollection --> "0..1" PhysicalEntity : physical_entity click PhysicalEntity href "../PhysicalEntity" SampleCollection : remark SampleCollection : sample_id_list SampleCollection --> "*" Sample : sample_id_list click Sample href "../Sample" SampleCollection : short_name SampleCollection : study_entity_links SampleCollection --> "*" StudyEntityLink : study_entity_links click StudyEntityLink href "../StudyEntityLink" SampleCollection : ui_label SampleCollection : unique_name

Inheritance

NamedThing
- StudyEntity
  - SampleCollection

Slots

Name	Cardinality and Range	Description	Inheritance
matrix	0..1 Matrix		direct
constraints	* String		direct
sample_id_list	* Sample		direct
physical_entity	0..1 PhysicalEntity		StudyEntity
study_entity_links	* StudyEntityLink		StudyEntity
id	1 String	Machine readable, unique identifier; ideally a URI/GUPRI (Globally Unique, Pe...	NamedThing
unique_name	0..1 String	Human readable name, unique across the context the entity is defined in	NamedThing
short_name	0..1 String	Shortened name or code, preferrable unique across the context the entity is d...	NamedThing
name	0..1 String	Common human readable name	NamedThing
ui_label	0..1 String	Human readable label, to be used in user facing interfaces in the most common...	NamedThing
description	0..1 String	Long form description or definition for the entity	NamedThing
remark	0..1 String	Additional comment, note or remark providing context on the use of an entity ...	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/peh/peh-model

Mappings

Mapping Type	Mapped Value
self	pehterms:SampleCollection
native	pehterms:SampleCollection

LinkML Source

Direct

name: SampleCollection
description: A collection of samples that is itself also a study entity that observations
  can be recorded for
from_schema: https://w3id.org/peh/peh-model
is_a: StudyEntity
slots:
- matrix
- constraints
- sample_id_list

Induced

name: SampleCollection
description: A collection of samples that is itself also a study entity that observations
  can be recorded for
from_schema: https://w3id.org/peh/peh-model
is_a: StudyEntity
attributes:
  matrix:
    name: matrix
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: matrix
    owner: SampleCollection
    domain_of:
    - Indicator
    - Sample
    - SampleCollection
    range: Matrix
  constraints:
    name: constraints
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: constraints
    owner: SampleCollection
    domain_of:
    - Indicator
    - Sample
    - SampleCollection
    range: string
    multivalued: true
  sample_id_list:
    name: sample_id_list
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: sample_id_list
    owner: SampleCollection
    domain_of:
    - SampleCollection
    range: Sample
    multivalued: true
  physical_entity:
    name: physical_entity
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: physical_entity
    owner: SampleCollection
    domain_of:
    - PhysicalEntityLink
    - StudyEntity
    range: PhysicalEntity
    inlined: false
  study_entity_links:
    name: study_entity_links
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: study_entity_links
    owner: SampleCollection
    domain_of:
    - StudyEntity
    range: StudyEntityLink
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Machine readable, unique identifier; ideally a URI/GUPRI (Globally
      Unique, Persistent, Resolvable Identifier).
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SampleCollection
    domain_of:
    - NamedThing
    range: string
    required: true
  unique_name:
    name: unique_name
    description: Human readable name, unique across the context the entity is defined
      in.
    from_schema: https://w3id.org/peh/peh-model
    close_mappings:
    - schema:identifier
    rank: 1000
    slot_uri: skos:prefLabel
    alias: unique_name
    owner: SampleCollection
    domain_of:
    - NamedThing
    range: string
  short_name:
    name: short_name
    description: Shortened name or code, preferrable unique across the context the
      entity is defined in.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: short_name
    owner: SampleCollection
    domain_of:
    - NamedThing
    range: string
  name:
    name: name
    description: Common human readable name
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:altLabel
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: SampleCollection
    domain_of:
    - NamedThing
    - Contact
    range: string
  ui_label:
    name: ui_label
    description: Human readable label, to be used in user facing interfaces in the
      most common use cases.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: ui_label
    owner: SampleCollection
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Long form description or definition for the entity.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:definition
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: SampleCollection
    domain_of:
    - NamedThing
    range: string
  remark:
    name: remark
    description: Additional comment, note or remark providing context on the use of
      an entity or the interpretation of its properties.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:note
    rank: 1000
    slot_uri: schema:comment
    alias: remark
    owner: SampleCollection
    domain_of:
    - NamedThing
    range: string