Class: Sample

A portion of a measurement matrix collected from a subject or environment for the purpose of lab analysis

classDiagram class Sample click Sample href "../Sample" PhysicalEntity <|-- Sample click PhysicalEntity href "../PhysicalEntity" Sample : collection_date Sample : constraints Sample : description Sample : id Sample : matrix Sample --> "0..1" Matrix : matrix click Matrix href "../Matrix" Sample : name Sample : physical_entity_links Sample --> "*" PhysicalEntityLink : physical_entity_links click PhysicalEntityLink href "../PhysicalEntityLink" Sample : physical_label Sample : remark Sample : sampled_in_project Sample --> "0..1" Project : sampled_in_project click Project href "../Project" Sample : short_name Sample : ui_label Sample : unique_name

Inheritance

NamedThing
- PhysicalEntity
  - Sample

Slots

Name	Cardinality and Range	Description	Inheritance
matrix	0..1 Matrix		direct
constraints	* String		direct
sampled_in_project	0..1 Project		direct
physical_label	0..1 String		direct
collection_date	0..1 Date		direct
physical_entity_links	* PhysicalEntityLink		PhysicalEntity
id	1 String	Machine readable, unique identifier; ideally a URI/GUPRI (Globally Unique, Pe...	NamedThing
unique_name	0..1 String	Human readable name, unique across the context the entity is defined in	NamedThing
short_name	0..1 String	Shortened name or code, preferrable unique across the context the entity is d...	NamedThing
name	0..1 String	Common human readable name	NamedThing
ui_label	0..1 String	Human readable label, to be used in user facing interfaces in the most common...	NamedThing
description	0..1 String	Long form description or definition for the entity	NamedThing
remark	0..1 String	Additional comment, note or remark providing context on the use of an entity ...	NamedThing

Usages

used by	used in	type	used
SampleCollection	sample_id_list	range	Sample

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/peh/peh-model

Mappings

Mapping Type	Mapped Value
self	pehterms:Sample
native	pehterms:Sample

LinkML Source

Direct

name: Sample
description: A portion of a measurement matrix collected from a subject or environment
  for the purpose of lab analysis
from_schema: https://w3id.org/peh/peh-model
is_a: PhysicalEntity
slots:
- matrix
- constraints
- sampled_in_project
- physical_label
- collection_date

Induced

name: Sample
description: A portion of a measurement matrix collected from a subject or environment
  for the purpose of lab analysis
from_schema: https://w3id.org/peh/peh-model
is_a: PhysicalEntity
attributes:
  matrix:
    name: matrix
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: matrix
    owner: Sample
    domain_of:
    - Indicator
    - Sample
    - SampleCollection
    range: Matrix
  constraints:
    name: constraints
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: constraints
    owner: Sample
    domain_of:
    - Indicator
    - Sample
    - SampleCollection
    range: string
    multivalued: true
  sampled_in_project:
    name: sampled_in_project
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: sampled_in_project
    owner: Sample
    domain_of:
    - Sample
    range: Project
    inlined: false
  physical_label:
    name: physical_label
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: physical_label
    owner: Sample
    domain_of:
    - Sample
    range: string
  collection_date:
    name: collection_date
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: collection_date
    owner: Sample
    domain_of:
    - Sample
    range: date
  physical_entity_links:
    name: physical_entity_links
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: physical_entity_links
    owner: Sample
    domain_of:
    - PhysicalEntity
    range: PhysicalEntityLink
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Machine readable, unique identifier; ideally a URI/GUPRI (Globally
      Unique, Persistent, Resolvable Identifier).
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Sample
    domain_of:
    - NamedThing
    range: string
    required: true
  unique_name:
    name: unique_name
    description: Human readable name, unique across the context the entity is defined
      in.
    from_schema: https://w3id.org/peh/peh-model
    close_mappings:
    - schema:identifier
    rank: 1000
    slot_uri: skos:prefLabel
    alias: unique_name
    owner: Sample
    domain_of:
    - NamedThing
    range: string
  short_name:
    name: short_name
    description: Shortened name or code, preferrable unique across the context the
      entity is defined in.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: short_name
    owner: Sample
    domain_of:
    - NamedThing
    range: string
  name:
    name: name
    description: Common human readable name
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:altLabel
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Sample
    domain_of:
    - NamedThing
    - Contact
    range: string
  ui_label:
    name: ui_label
    description: Human readable label, to be used in user facing interfaces in the
      most common use cases.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: ui_label
    owner: Sample
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Long form description or definition for the entity.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:definition
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Sample
    domain_of:
    - NamedThing
    range: string
  remark:
    name: remark
    description: Additional comment, note or remark providing context on the use of
      an entity or the interpretation of its properties.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:note
    rank: 1000
    slot_uri: schema:comment
    alias: remark
    owner: Sample
    domain_of:
    - NamedThing
    range: string