Class: Matrix

The physical medium or biological substrate from which a biomarker, or other analyte is quantified in observational studies

URI: pehterms:Matrix

classDiagram class Matrix click Matrix href "../Matrix" HasContextAliases <|-- Matrix click HasContextAliases href "../HasContextAliases" HasTranslations <|-- Matrix click HasTranslations href "../HasTranslations" NamedThing <|-- Matrix click NamedThing href "../NamedThing" Matrix : aggregation_target Matrix : context_aliases Matrix --> "*" ContextAlias : context_aliases click ContextAlias href "../ContextAlias" Matrix : description Matrix : id Matrix : name Matrix : parent_matrix Matrix --> "0..1" Matrix : parent_matrix click Matrix href "../Matrix" Matrix : remark Matrix : secondary_parent_matrix_id_list Matrix --> "*" Matrix : secondary_parent_matrix_id_list click Matrix href "../Matrix" Matrix : short_name Matrix : sort_order Matrix : translations Matrix --> "*" Translation : translations click Translation href "../Translation" Matrix : ui_label Matrix : unique_name

Inheritance

NamedThing
- Matrix [ HasContextAliases HasTranslations]

Slots

Name	Cardinality and Range	Description	Inheritance
sort_order	0..1 Decimal		direct
aggregation_target	0..1 Boolean		direct
parent_matrix	0..1 Matrix		direct
secondary_parent_matrix_id_list	* Matrix		direct
context_aliases	* ContextAlias		HasContextAliases
translations	* Translation		HasTranslations
id	1 String	Machine readable, unique identifier; ideally a URI/GUPRI (Globally Unique, Pe...	NamedThing
unique_name	0..1 String	Human readable name, unique across the context the entity is defined in	NamedThing
short_name	0..1 String	Shortened name or code, preferrable unique across the context the entity is d...	NamedThing
name	0..1 String	Common human readable name	NamedThing
ui_label	0..1 String	Human readable label, to be used in user facing interfaces in the most common...	NamedThing
description	0..1 String	Long form description or definition for the entity	NamedThing
remark	0..1 String	Additional comment, note or remark providing context on the use of an entity ...	NamedThing

Usages

used by	used in	type	used
EntityList	matrices	range	Matrix
Matrix	parent_matrix	range	Matrix
Matrix	secondary_parent_matrix_id_list	range	Matrix
Indicator	matrix	range	Matrix
Sample	matrix	range	Matrix
SampleCollection	matrix	range	Matrix

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/peh/peh-model

Mappings

Mapping Type	Mapped Value
self	pehterms:Matrix
native	pehterms:Matrix

LinkML Source

Direct

name: Matrix
description: The physical medium or biological substrate from which a biomarker, or
  other analyte is quantified in observational studies
from_schema: https://w3id.org/peh/peh-model
is_a: NamedThing
mixins:
- HasContextAliases
- HasTranslations
slots:
- sort_order
- aggregation_target
- parent_matrix
- secondary_parent_matrix_id_list

Induced

name: Matrix
description: The physical medium or biological substrate from which a biomarker, or
  other analyte is quantified in observational studies
from_schema: https://w3id.org/peh/peh-model
is_a: NamedThing
mixins:
- HasContextAliases
- HasTranslations
attributes:
  sort_order:
    name: sort_order
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: sort_order
    owner: Matrix
    domain_of:
    - Grouping
    - Matrix
    - ObservationGroup
    range: decimal
  aggregation_target:
    name: aggregation_target
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: aggregation_target
    owner: Matrix
    domain_of:
    - Matrix
    range: boolean
  parent_matrix:
    name: parent_matrix
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    slot_uri: skos:broader
    alias: parent_matrix
    owner: Matrix
    domain_of:
    - Matrix
    range: Matrix
  secondary_parent_matrix_id_list:
    name: secondary_parent_matrix_id_list
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: secondary_parent_matrix_id_list
    owner: Matrix
    domain_of:
    - Matrix
    range: Matrix
    multivalued: true
  context_aliases:
    name: context_aliases
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: context_aliases
    owner: Matrix
    domain_of:
    - HasContextAliases
    range: ContextAlias
    multivalued: true
    inlined: true
    inlined_as_list: true
  translations:
    name: translations
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: translations
    owner: Matrix
    domain_of:
    - HasTranslations
    range: Translation
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Machine readable, unique identifier; ideally a URI/GUPRI (Globally
      Unique, Persistent, Resolvable Identifier).
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Matrix
    domain_of:
    - NamedThing
    range: string
    required: true
  unique_name:
    name: unique_name
    description: Human readable name, unique across the context the entity is defined
      in.
    from_schema: https://w3id.org/peh/peh-model
    close_mappings:
    - schema:identifier
    rank: 1000
    slot_uri: skos:prefLabel
    alias: unique_name
    owner: Matrix
    domain_of:
    - NamedThing
    range: string
  short_name:
    name: short_name
    description: Shortened name or code, preferrable unique across the context the
      entity is defined in.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: short_name
    owner: Matrix
    domain_of:
    - NamedThing
    range: string
  name:
    name: name
    description: Common human readable name
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:altLabel
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Matrix
    domain_of:
    - NamedThing
    - Contact
    range: string
  ui_label:
    name: ui_label
    description: Human readable label, to be used in user facing interfaces in the
      most common use cases.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: ui_label
    owner: Matrix
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Long form description or definition for the entity.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:definition
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Matrix
    domain_of:
    - NamedThing
    range: string
  remark:
    name: remark
    description: Additional comment, note or remark providing context on the use of
      an entity or the interpretation of its properties.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:note
    rank: 1000
    slot_uri: schema:comment
    alias: remark
    owner: Matrix
    domain_of:
    - NamedThing
    range: string