Class: BioChemEntity

A biological, chemical or biochemical entity that is relevant to the Personal Exposure and Health domain

classDiagram class BioChemEntity click BioChemEntity href "../BioChemEntity" HasAliases <|-- BioChemEntity click HasAliases href "../HasAliases" HasContextAliases <|-- BioChemEntity click HasContextAliases href "../HasContextAliases" HasTranslations <|-- BioChemEntity click HasTranslations href "../HasTranslations" HasValidationStatus <|-- BioChemEntity click HasValidationStatus href "../HasValidationStatus" NamedThing <|-- BioChemEntity click NamedThing href "../NamedThing" BioChemEntity : aliases BioChemEntity : biochementity_links BioChemEntity --> "*" BioChemEntityLink : biochementity_links click BioChemEntityLink href "../BioChemEntityLink" BioChemEntity : biochemidentifiers BioChemEntity --> "*" BioChemIdentifier : biochemidentifiers click BioChemIdentifier href "../BioChemIdentifier" BioChemEntity : context_aliases BioChemEntity --> "*" ContextAlias : context_aliases click ContextAlias href "../ContextAlias" BioChemEntity : current_validation_status BioChemEntity --> "0..1" ValidationStatus : current_validation_status click ValidationStatus href "../ValidationStatus" BioChemEntity : description BioChemEntity : grouping_id_list BioChemEntity --> "*" Grouping : grouping_id_list click Grouping href "../Grouping" BioChemEntity : id BioChemEntity : molweight_grampermol BioChemEntity : name BioChemEntity : remark BioChemEntity : short_name BioChemEntity : translations BioChemEntity --> "*" Translation : translations click Translation href "../Translation" BioChemEntity : ui_label BioChemEntity : unique_name BioChemEntity : validation_history BioChemEntity --> "*" ValidationHistoryRecord : validation_history click ValidationHistoryRecord href "../ValidationHistoryRecord"

Inheritance

NamedThing
- BioChemEntity [ HasAliases HasContextAliases HasTranslations HasValidationStatus]

Slots

Name	Cardinality and Range	Description	Inheritance
grouping_id_list	* Grouping		direct
molweight_grampermol	0..1 Decimal		direct
biochemidentifiers	* BioChemIdentifier		direct
biochementity_links	* BioChemEntityLink		direct
aliases	* String		HasAliases
context_aliases	* ContextAlias		HasContextAliases
translations	* Translation		HasTranslations
current_validation_status	0..1 ValidationStatus		HasValidationStatus
validation_history	* ValidationHistoryRecord		HasValidationStatus
id	1 String	Machine readable, unique identifier; ideally a URI/GUPRI (Globally Unique, Pe...	NamedThing
unique_name	0..1 String	Human readable name, unique across the context the entity is defined in	NamedThing
short_name	0..1 String	Shortened name or code, preferrable unique across the context the entity is d...	NamedThing
name	0..1 String	Common human readable name	NamedThing
ui_label	0..1 String	Human readable label, to be used in user facing interfaces in the most common...	NamedThing
description	0..1 String	Long form description or definition for the entity	NamedThing
remark	0..1 String	Additional comment, note or remark providing context on the use of an entity ...	NamedThing

Usages

used by	used in	type	used
EntityList	biochementities	range	BioChemEntity
BioChemEntityLink	biochementity	range	BioChemEntity

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/peh/peh-model

Mappings

Mapping Type	Mapped Value
self	schema:BioChemEntity
native	pehterms:BioChemEntity

LinkML Source

Direct

name: BioChemEntity
description: A biological, chemical or biochemical entity that is relevant to the
  Personal Exposure and Health domain
from_schema: https://w3id.org/peh/peh-model
is_a: NamedThing
mixins:
- HasAliases
- HasContextAliases
- HasTranslations
- HasValidationStatus
slots:
- grouping_id_list
- molweight_grampermol
- biochemidentifiers
- biochementity_links
class_uri: schema:BioChemEntity

Induced

name: BioChemEntity
description: A biological, chemical or biochemical entity that is relevant to the
  Personal Exposure and Health domain
from_schema: https://w3id.org/peh/peh-model
is_a: NamedThing
mixins:
- HasAliases
- HasContextAliases
- HasTranslations
- HasValidationStatus
attributes:
  grouping_id_list:
    name: grouping_id_list
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: grouping_id_list
    owner: BioChemEntity
    domain_of:
    - BioChemEntity
    - Indicator
    - ObservableProperty
    range: Grouping
    multivalued: true
  molweight_grampermol:
    name: molweight_grampermol
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: molweight_grampermol
    owner: BioChemEntity
    domain_of:
    - BioChemEntity
    range: decimal
  biochemidentifiers:
    name: biochemidentifiers
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: biochemidentifiers
    owner: BioChemEntity
    domain_of:
    - BioChemEntity
    range: BioChemIdentifier
    multivalued: true
    inlined: true
    inlined_as_list: true
  biochementity_links:
    name: biochementity_links
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: biochementity_links
    owner: BioChemEntity
    domain_of:
    - BioChemEntity
    - Indicator
    range: BioChemEntityLink
    multivalued: true
    inlined: true
    inlined_as_list: true
  aliases:
    name: aliases
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: aliases
    owner: BioChemEntity
    domain_of:
    - HasAliases
    range: string
    multivalued: true
    inlined: true
    inlined_as_list: true
  context_aliases:
    name: context_aliases
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: context_aliases
    owner: BioChemEntity
    domain_of:
    - HasContextAliases
    range: ContextAlias
    multivalued: true
    inlined: true
    inlined_as_list: true
  translations:
    name: translations
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: translations
    owner: BioChemEntity
    domain_of:
    - HasTranslations
    range: Translation
    multivalued: true
    inlined: true
    inlined_as_list: true
  current_validation_status:
    name: current_validation_status
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: current_validation_status
    owner: BioChemEntity
    domain_of:
    - HasValidationStatus
    range: ValidationStatus
  validation_history:
    name: validation_history
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: validation_history
    owner: BioChemEntity
    domain_of:
    - HasValidationStatus
    range: ValidationHistoryRecord
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Machine readable, unique identifier; ideally a URI/GUPRI (Globally
      Unique, Persistent, Resolvable Identifier).
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: BioChemEntity
    domain_of:
    - NamedThing
    range: string
    required: true
  unique_name:
    name: unique_name
    description: Human readable name, unique across the context the entity is defined
      in.
    from_schema: https://w3id.org/peh/peh-model
    close_mappings:
    - schema:identifier
    rank: 1000
    slot_uri: skos:prefLabel
    alias: unique_name
    owner: BioChemEntity
    domain_of:
    - NamedThing
    range: string
  short_name:
    name: short_name
    description: Shortened name or code, preferrable unique across the context the
      entity is defined in.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: short_name
    owner: BioChemEntity
    domain_of:
    - NamedThing
    range: string
  name:
    name: name
    description: Common human readable name
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:altLabel
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: BioChemEntity
    domain_of:
    - NamedThing
    - Contact
    range: string
  ui_label:
    name: ui_label
    description: Human readable label, to be used in user facing interfaces in the
      most common use cases.
    from_schema: https://w3id.org/peh/peh-model
    rank: 1000
    alias: ui_label
    owner: BioChemEntity
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Long form description or definition for the entity.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:definition
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: BioChemEntity
    domain_of:
    - NamedThing
    range: string
  remark:
    name: remark
    description: Additional comment, note or remark providing context on the use of
      an entity or the interpretation of its properties.
    from_schema: https://w3id.org/peh/peh-model
    exact_mappings:
    - skos:note
    rank: 1000
    slot_uri: schema:comment
    alias: remark
    owner: BioChemEntity
    domain_of:
    - NamedThing
    range: string
class_uri: schema:BioChemEntity