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PEH-Model

Entity and relation ontology and datamodel for Personal Exposure and Health data

URI: https://w3id.org/peh/peh-model

Name: PEH-Model

Classes

Class Description
BioChemEntityLink A relational property that allows creating qualified links to biochemical ent...
BioChemIdentifier An identifier by which a biochemical entity is known in a schema (the BioChem...
CalculationArgument The definition of a positional argument used in the calculation, including th...
CalculationDesign Definition of a calculation method for deriving an observational value from o...
CalculationImplementation Reference and parameters mapping to the implementation that can perform the i...
CalculationKeywordArgument The definition of a named argument used in the calculation, including the inf...
CalculationResult The definition for the output the calculation, optionally including mapping i...
Contact A stakeholder having a contact role in the research process
ContextAlias An alternative term as it is used in a known scope or context (e
DataExtract A set of Observed Values, combined into a data extract
DataLayoutElement Definition for an individual layout or data element, as part of a layout sect...
EntityList A generic top level object for collecting named entities under one root entit...
HasAliases The capacity of including one or more alternative naming terms (without quali...
HasContextAliases The capacity of including a list of terms being used in known scopes or conte...
HasTranslations The capacity of including a list of translated terms for one or more entity p...
HasValidationStatus The capacity of including both a current validation status and a history of v...
NamedThing An abstract model for any of the identifiable entities
        BioChemEntity A biological, chemical or biochemical entity that is relevant to the Personal...
        BioChemIdentifierSchema A well-defined schema used by a certain community or system, listing biochemi...
        DataLayout Layout, allowing the definition of templating sections for combining layout a...
        DataLayoutSection Definition for an individual layout or data section, as part of a full layout
        DataRequest Registration of a request for data by a data user
        DataStakeholder An organisation participating in a data process in Personal Exposure and Heal...
        Grouping A generic grouping entity that allows categorising entities in a hierarchical...
        Indicator Any measurable or observable variable that can describe data or context in th...
        Matrix The physical medium or biological substrate from which a biomarker, or other ...
        ObservableProperty A fully defined variable that allows registering an observation about any of ...
        ObservablePropertyMetadataField Predefined contextual qualifier for Observable Property metadata
        Observation The registration of the intent to perform a set of observations as well as th...
        ObservationResult The result of an observational effort in Personal Exposure and Health researc...
        PhysicalEntity A digital placeholder for a physical entity as it exists in the real world,
                Environment An environment relevant to the research, typically related to the exposure of...
                        HomeEnvironment A home environment relevant to the research, typically related to the at-home...
                        WorkEnvironment A work environment relevant to the research, typically related to the at-work...
                Geolocation A geographic location relevant to the Personal Exposure and Health projects o...
                Person A human subject or stakeholder in Personal Exposure and Health research
                Sample A portion of a measurement matrix collected from a subject or environment for...
        ProcessingAction One action in the data request and processing flow
        ProcessingStep One step in the data request and processing flow
        ResearchObjective A research objective communicated in the request and used to evaluate if the ...
        Stakeholder Any organisation involved in the research process
        StudyEntity Any entity carrying data or context relevant to a Personal Exposure and Healt...
                ObservationGroup A grouped collection of observations, intended and/or executed, as part of a ...
                Project A collaborative effort in the Personal Exposure and Health research domain
                SampleCollection A collection of samples that is itself also a study entity that observations ...
                Study A structured, goal-directed observational investigation designed to collect a...
                StudyPopulation A group of study entities that is itself also a study entity that observation...
                StudySubject A study entity that is a main subject for the study
                StudySubjectGroup A group of study subjects that is itself also a study entity that observation...
        Unit A unit of measurement, a quantity chosen as a standard in terms of which othe...
ObservableEntityPropertySet The list of properties being observed and the study entities they will be obs...
ObservablePropertyMetadataElement Key-value element that adds contextual metadata to an Observable Property ins...
ObservablePropertyValueOption Potential selection choices for Observable Properties that are categorical va...
ObservationDesign The registration of the intent to perform a number of observations
ObservedEntityProperty Conceptual definition of the observation of a certain property for a certain ...
ObservedValue A single observational result value registering a specific property for a spe...
PhysicalEntityLink A relational property that allows creating qualified links to physical entiti...
ProjectStakeholder An organisation collaborating in a Personal Exposure and Health research proj...
ProvenanceData Provenance metadata, adding context to an Observed Value
QualityData Quality metadata, adding context to an Observed Value
StudyEntityLink A relational property that allows creating qualified links to study entities
StudyStakeholder An organisation collaborating in a Personal Exposure and Health research stud...
Translation A translation for any of the entity properties, defining the property, the la...
ValidationDesign Definition of a validation rule for automatically imposing business logic con...
ValidationExpression A logical expression, allowing for combining arguments into more complex vali...
ValidationHistoryRecord A list of events representing a historical record on the entity validation st...

Slots

Slot Description
abstract
aggregation_target
alias
aliases
authors
biochementities
biochementity
biochementity_links
biochementity_linktype
biochemidentifiers
calculation_designs
calculation_implementation
calculation_implementation_as_json
calculation_name
categorical
collection_date
conditional
constraints
contact_email
contact_phone
contact_roles
contacts
context
context_aliases
current_validation_status
data_requests
data_roles
data_stakeholders
default_immutable
default_language
default_observation_result_type
default_required
default_significantdecimals
default_unit
default_unit_label
default_zeroallowed
delivery_date
description Long form description or definition for the entity
destination_path
element_style
element_type
elements
end_date
field
function_args
function_kwargs
function_name
function_results
geographic_scope
grouping_id_list
groupings
id Machine readable, unique identifier; ideally a URI/GUPRI (Globally Unique, Pe...
identifier_code
identifier_schema
identifying_observable_property_id_list
imputation_state
imputed_unit
imputed_value
indicator
indicator_type
indicators
is_foreign_key
is_observable_entity_key
key
label
language
layouts
linktype
location
mapping_name
matrices
matrix
member_id_list
metadata_fields
molweight_grampermol
multivalued
name Common human readable name
normalised_unit
normalised_value
objective_type
observable_entity
observable_entity_grouping_id_list
observable_entity_id_list
observable_entity_property_sets
observable_entity_type
observable_entity_types
observable_properties
observable_property
observation_design
observation_end_date
observation_group_id_list
observation_groups
observation_id_list
observation_result_id_list
observation_result_type
observation_results
observation_start_date
observation_type
observations
observed_entity_properties
observed_values
optional_observable_property_id_list
orcid
parent_grouping_id_list
parent_matrix
physical_entities
physical_entity
physical_entity_links
physical_label
process_state
processing_actions
processing_description
processing_steps
project_id_list
project_roles
project_stakeholders
projects
property
property_name
provenance_context_key
provenance_data
provenance_value
quality_context_key
quality_data
quality_value
quantity_kind
raw_unit
raw_value
recruited_in_project
relevant_observable_entity_types
relevant_observation_types
remark Additional comment, note or remark providing context on the use of an entity ...
remark_on_content
remark_on_methodology
request_properties
required_observable_property_id_list
research_objectives
research_population_type
rorid
round_decimals
same_unit_as
sample_id_list
sampled_in_project
scale_factor
secondary_parent_matrix_id_list
section_type
sections
short_name Shortened name or code, preferrable unique across the context the entity is d...
sort_order
source_path
stakeholder
stakeholders
start_date
studies
study_entities
study_entity
study_entity_id_list
study_entity_links
study_id_list
study_roles
study_stakeholders
translated_value
translations
ui_label Human readable label, to be used in user facing interfaces in the most common...
unique_name Human readable name, unique across the context the entity is defined in
unit
units
validation_actor
validation_arg_expressions
validation_arg_source_paths
validation_arg_values
validation_command
validation_condition_expression
validation_datetime
validation_designs
validation_error_level
validation_error_message_template
validation_expression
validation_history
validation_institute
validation_name
validation_remark
validation_status
validation_subject_source_paths
value
value_as_string
value_metadata
value_options
value_type
varname
web_uri

Enumerations

Enumeration Description
BioChemEntityLinkType
ContactRole
DataLayoutElementStyle
DataLayoutElementType
DataLayoutSectionType
DataRole
IndicatorType
LinkType
ObjectiveType
ObservableEntityType
ObservationResultType
ObservationType
ProjectRole
QudtQuantityKind
QudtUnit
ResearchPopulationType
StudyRole
ValidationCommand
ValidationErrorLevel
ValidationStatus

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description